TSS: Rfhg 39340.1: Difference between revisions

Latest revision as of 11:46, 15 March 2025

Basic information about the TSS

TSS ID:	rfhg_39340.1
TSS ID(Version3):	hg_25518.1
Species:	human
Chr:	chr2

Start:	219498825
End:	219498931
Strand:	+

Source datasets

Protocol

TSS cluster detected^*

16

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000684669.1:0 ENST00000683382.1:0 ENST00000682340.1:0 ENST00000684274.1:0 ENST00000683241.1:0 ENST00000684227.1:0 ENST00000683746.1:0 ENST00000683591.1:0 ENST00000684562.1:0 ENST00000682058.1:0 ENST00000682435.1:0 ENST00000683617.1:0 ENST00000684242.1:0 ENST00000635609.2:0 ENST00000683964.1:0 ENST00000684412.1:0 ENST00000373917.7:0 ENST00000682102.1:0 ENST00000455657.6:0 ENST00000682576.1:0 ENST00000684334.1:0 ENST00000683598.1:0 ENST00000683131.1:0 ENST00000683946.1:0 ENST00000435316.6:0 ENST00000313597.10:0 ENST00000684729.1:0 ENST00000683203.1:0 ENST00000683864.1:0 ENST00000682481.1:0 ENST00000358215.8:0 ENST00000480506.6:0 ENST00000443704.5:0 ENST00000373908.5:0 ENST00000622191.2:0 ENST00000683752.1:0 ENST00000341142.8:0 ENST00000682443.1:0 AK000999:0 AK290671:0 AK222951:0 AK022578:0 AK296193:0 BC007456:0 GQ891444:0
GeneID:	29926
HGNC/MGI_ID:	HGNC:22923
UniProt_ID:	A0A384MDS7 B4DJR0 C9J255 C9JAH0 F8WD54 Q96IJ6
Nearer transcript ids and distances:	ENST00000683691.1:68 ENST00000683402.1:89 LF318654:150 MA554231:150 ENST00000683386.1:175 ENST00000683626.1:175 LF318655:461 MA554232:461 view more...

Gene_name:	GDP-mannose pyrophosphorylase A
Gene_symbol:	GMPPA
Gene_synonyms:
Gene_source:	HGNC:22923

TATA-Box annotation

Distance to TSS:	-13
Nearest PromoterID:	NM_013335
Entrez ID:	29926
Nearest Unigene:	Hs.27059
Nearest Refseq:	NM_013335
Nearest Ensembl:	ENSG00000144591
Gene Name:	GDP-mannose pyrophosphorylase A
Gene Alias:	AAMR
Gene Type:	protein-coding
CpG%:	0.094340
GC%:	0.598131
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000684669.1:0 ENST00000683382.1:0 ENST00000682340.1:0 ENST00000684274.1:0 ENST00000683241.1:0 ENST00000684227.1:0 ENST00000683746.1:0 ENST00000683591.1:0 ENST00000684562.1:0 ENST00000682058.1:0 ENST00000682435.1:0 ENST00000683617.1:0 ENST00000684242.1:0 ENST00000635609.2:0 ENST00000683964.1:0 ENST00000684412.1:0 ENST00000373917.7:0 ENST00000682102.1:0 ENST00000455657.6:0 ENST00000682576.1:0 ENST00000684334.1:0 ENST00000683598.1:0 ENST00000683131.1:0 ENST00000683946.1:0 ENST00000435316.6:0 ENST00000313597.10:0 ENST00000684729.1:0 ENST00000683203.1:0 ENST00000683864.1:0 ENST00000682481.1:0 ENST00000358215.8:0 ENST00000480506.6:0 ENST00000443704.5:0 ENST00000373908.5:0 ENST00000622191.2:0 ENST00000683752.1:0 ENST00000341142.8:0 ENST00000682443.1:0 NM_001374294.1:0 NM_013335.4:0 NM_205847.3:0 NM_001374295.1:0 LF205256:0 MA440833:0 AK000999:0 AK290671:0 AK222951:0 AK022578:0 AK296193:0 BC007456:0 GQ891444:0 ENST00000683691.1:68 ENST00000683402.1:89 LF318654:150 MA554231:150 ENST00000683386.1:175 ENST00000683626.1:175 LF318655:461 MA554232:461
 |annotation=promoter-TSS (NM_013335)
 |ccre_category=N
@@ Line 15: / Line 16: @@
 |gene_description=GDP-mannose pyrophosphorylase A
 |gene_id=29926
-|gene_name=GMPPA
+|gene_name=GDP-mannose pyrophosphorylase A
 |gene_source=HGNC:22923
 |gene_symbol=GMPPA
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_013335
 |nearest_refseq=NM_013335
+|nearest_transcripts=ENST00000683691.1:68 ENST00000683402.1:89 LF318654:150 MA554231:150 ENST00000683386.1:175 ENST00000683626.1:175 LF318655:461 MA554232:461
 |nearest_unigene=Hs.27059
 |peak_score=1