TSS: Rfhg 40729.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=NM_005737.3:-24 ENST00000390645.2:-28 MC016480:-28 BC089043:-28 ENST00000339728.6:-56 NM_001282431.2:-56 AJ579850:415 AJ579851:415 Y17804:415 AK314119:425 AB464455:426 EU832169:427 EU832263:427 KJ892927:427 AF493892:429 BT019378:429 BT019379:429 BC001051:456 AB016811:464
|annotation=promoter-TSS (NM_001282431)
|annotation=promoter-TSS (NM_001282431)
|ccre_category=PLS
|ccre_category=PLS
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|gene_description=ADP ribosylation factor like GTPase 4C
|gene_description=ADP ribosylation factor like GTPase 4C
|gene_id=
|gene_id=
|gene_name=ARL4C
|gene_name=
|gene_source=
|gene_source=
|gene_symbol=
|gene_symbol=
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|nearest_promoter_id=NM_005737
|nearest_promoter_id=NM_005737
|nearest_refseq=NM_005737
|nearest_refseq=NM_005737
|nearest_transcripts=ENST00000390645.2:-28 MC016480:-28 BC089043:-28 ENST00000339728.6:-56 NM_001282431.2:-56 AJ579850:415 AJ579851:415 Y17804:415 AK314119:425 AB464455:426 EU832169:427 EU832263:427 KJ892927:427 AF493892:429 BT019378:429 BT019379:429 BC001051:456 AB016811:464
|nearest_unigene=Hs.111554
|nearest_unigene=Hs.111554
|peak_score=1
|peak_score=1

Latest revision as of 12:12, 15 March 2025

Basic information about the TSS

TSS ID:rfhg_40729.1
Species:human
Chr:chr2
Start:234497015
End:234497025
Strand:-
Source datasetsFANTOM5|EPD
ProtocolCAGE|TSS_database
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3259579,EH38E2085107)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:NM_005737.3:-24
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000390645.2:-28
  • MC016480:-28
  • BC089043:-28
  • ENST00000339728.6:-56
  • NM_001282431.2:-56
  • AJ579850:415
  • AJ579851:415
  • Y17804:415
  • AK314119:425
  • AB464455:426
  • EU832169:427
  • EU832263:427
  • KJ892927:427
  • AF493892:429
  • BT019378:429
  • BT019379:429
  • BC001051:456
  • AB016811:464
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:29
Nearest PromoterID:NM_005737
Entrez ID:10123
Nearest Unigene:Hs.111554
Nearest Refseq:NM_005737
Nearest Ensembl:ENSG00000188042
Gene Name:
Gene Alias:ARL7|LAK
Gene Type:protein-coding
CpG%:0.100000
GC%:0.727273
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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