TSS: Rfhg 43801.1: Difference between revisions

Latest revision as of 13:08, 15 March 2025

Basic information about the TSS

TSS ID:	rfhg_43801.1
Species:	human
Chr:	chr3

Start:	35639964
End:	35639974
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D3413042,EH38E2191583)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	444
Nearest PromoterID:	NM_001267616
Entrez ID:	10777
Nearest Unigene:	Hs.475902
Nearest Refseq:	NM_016300
Nearest Ensembl:	ENSG00000172995
Gene Name:
Gene Alias:	ARPP-21\|R3HDM3\|RCS\|TARPP
Gene Type:	protein-coding
CpG%:	0.100000
GC%:	0.636364
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=5' UTR (NM_001267616, exon 1 of 6)
 |ccre_category=pELS
@@ Line 15: / Line 16: @@
 |gene_description=cAMP regulated phosphoprotein 21
 |gene_id=
-|gene_name=ARPP21
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001267616
 |nearest_refseq=NM_016300
+|nearest_transcripts=
 |nearest_unigene=Hs.475902
 |peak_score=1