TSS: Rfhg 46348.1: Difference between revisions

Latest revision as of 13:57, 15 March 2025

Basic information about the TSS

TSS ID:	rfhg_46348.1
Species:	human
Chr:	chr3

Start:	58433582
End:	58433610
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3433671,EH38E2206333)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	236
Nearest PromoterID:	NM_000925
Entrez ID:	5162
Nearest Unigene:	Hs.161357
Nearest Refseq:	NM_000925
Nearest Ensembl:	ENSG00000168291
Gene Name:
Gene Alias:	PDHBD\|PDHE1-B\|PDHE1B\|PHE1B
Gene Type:	protein-coding
CpG%:	0.107143
GC%:	0.758621
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_001315536, intron 1 of 8)
 |ccre_category=pELS
@@ Line 15: / Line 16: @@
 |gene_description=pyruvate dehydrogenase E1 beta subunit
 |gene_id=
-|gene_name=PDHB
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_000925
 |nearest_refseq=NM_000925
+|nearest_transcripts=
 |nearest_unigene=Hs.161357
 |peak_score=1