TSS: Rfhg 51219.1: Difference between revisions

Latest revision as of 15:30, 15 March 2025

Basic information about the TSS

TSS ID:	rfhg_51219.1
Species:	human
Chr:	chr3

Start:	147393632
End:	147393643
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D3497702,EH38E2246204)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	BC041954:-197
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000472523.1:-210 ENST00000488404.5:252 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-1207
Nearest PromoterID:	NR_040762
Entrez ID:	84107
Nearest Unigene:	Hs.415766
Nearest Refseq:	NM_032153
Nearest Ensembl:	ENSG00000174963
Gene Name:
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.090909
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=BC041954:-197 ENST00000472523.1:-210 ENST00000488404.5:252
 |annotation=intron (NM_001243256, intron 2 of 3)
 |ccre_category=dELS
@@ Line 15: / Line 16: @@
 |gene_description=Zic family member 4
 |gene_id=
-|gene_name=ZIC4
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_040762
 |nearest_refseq=NM_032153
+|nearest_transcripts=ENST00000472523.1:-210 ENST00000488404.5:252
 |nearest_unigene=Hs.415766
 |peak_score=1