TSS: Rfhg 51438.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=BC034145:-10 AK130271:-27 AK130073:34 ENST00000493348.1:35 ENST00000305366.8:78 ENST00000493298.1:78 NM_014220.3:78 BC008442:79 LF351597:111 MA587174:111 M90657:118 BC010166:130 CU679647:179 CR456953:180 MB471893:-232 | |||
|annotation=promoter-TSS (NM_014220) | |annotation=promoter-TSS (NM_014220) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|gene_description=TM4SF1 antisense RNA 1 | |gene_description=TM4SF1 antisense RNA 1 | ||
|gene_id=4071 | |gene_id=4071 | ||
|gene_name= | |gene_name=transmembrane 4 L six family member 1 | ||
|gene_source=HGNC:11853 | |gene_source=HGNC:11853 | ||
|gene_symbol=TM4SF1 | |gene_symbol=TM4SF1 | ||
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|nearest_promoter_id=NR_109809 | |nearest_promoter_id=NR_109809 | ||
|nearest_refseq=NR_046650 | |nearest_refseq=NR_046650 | ||
|nearest_transcripts=AK130271:-27 AK130073:34 ENST00000493348.1:35 ENST00000305366.8:78 ENST00000493298.1:78 NM_014220.3:78 BC008442:79 LF351597:111 MA587174:111 M90657:118 BC010166:130 CU679647:179 CR456953:180 MB471893:-232 | |||
|nearest_unigene=Hs.549633 | |nearest_unigene=Hs.549633 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 15:34, 15 March 2025
Basic information about the TSS
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| Source datasets | ENCODE|PRJNA615891|PRJNA548673 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TIF-seq2|SLIC_CAGE|ReCappable-seq | |||||||||||||||
| TSS cluster detected* | 5 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3499237,EH38E2247169) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -49 |
|---|---|
| Nearest PromoterID: | NR_109809 |
| Entrez ID: | 100874091 |
| Nearest Unigene: | Hs.549633 |
| Nearest Refseq: | NR_046650 |
| Nearest Ensembl: | ENSG00000240541 |
| Gene Name: | transmembrane 4 L six family member 1 |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.000000 |
| GC%: | 0.333333 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.