TSS: Rfhg 54414.1: Difference between revisions

Latest revision as of 16:30, 15 March 2025

Basic information about the TSS

TSS ID:	rfhg_54414.1
Species:	human
Chr:	chr3

Start:	192409583
End:	192409602
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3533076,EH38E2269669)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_021032.5:0 NM_001377294.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	LF210574:482 MA446151:482 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-543
Nearest PromoterID:	NM_021032
Entrez ID:	2257
Nearest Unigene:	Hs.390250
Nearest Refseq:	NM_004113
Nearest Ensembl:	ENSG00000114279
Gene Name:
Gene Alias:	EIEE47\|FGF12B\|FHF1
Gene Type:	protein-coding
CpG%:	0.052632
GC%:	0.650000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_021032.5:0 NM_001377294.1:0 LF210574:482 MA446151:482
 |annotation=promoter-TSS (NM_021032)
 |ccre_category=pELS
@@ Line 15: / Line 16: @@
 |gene_description=fibroblast growth factor 12
 |gene_id=
-|gene_name=FGF12
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_021032
 |nearest_refseq=NM_004113
+|nearest_transcripts=LF210574:482 MA446151:482
 |nearest_unigene=Hs.390250
 |peak_score=1