TSS: Rfhg 59350.1: Difference between revisions

Latest revision as of 18:03, 15 March 2025

Basic information about the TSS

TSS ID:	rfhg_59350.1
Species:	human
Chr:	chr4

Start:	77820293
End:	77820317
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3591555,EH38E2305735)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001365006.1:24 NM_001387836.1:24 NM_001387839.1:24 NM_001387835.1:24
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-36
Nearest PromoterID:	NM_001365006
Entrez ID:	246175
Nearest Unigene:	Hs.592519
Nearest Refseq:	NM_144571
Nearest Ensembl:	ENSG00000138767
Gene Name:
Gene Alias:	CCR4b
Gene Type:	protein-coding
CpG%:	0.041667
GC%:	0.760000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001365006.1:24 NM_001387836.1:24 NM_001387839.1:24 NM_001387835.1:24
 |annotation=promoter-TSS (NM_001286790)
 |ccre_category=pELS
@@ Line 15: / Line 16: @@
 |gene_description=CCR4-NOT transcription complex subunit 6 like
 |gene_id=
-|gene_name=CNOT6L
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001365006
 |nearest_refseq=NM_144571
+|nearest_transcripts=
 |nearest_unigene=Hs.592519
 |peak_score=1