TSS: Rfhg 61401.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=NM_001354273.2:-40 NM_001354268.2:-40 NM_001354245.2:-40 NM_001354258.2:-40 NM_001354228.2:-40 NM_001354232.2:-40 NM_001354236.2:-40 NM_001354265.2:-40 NM_001354246.2:-40 NM_001354235.2:-40 NM_001354225.2:-40 NM_001354241.2:-40 ENST00000682211.1:60 ENST00000671727.1:60 ENST00000671762.1:60 ENST00000672366.1:60 ENST00000672502.1:60 ENST00000672045.1:87 ENST00000672251.1:87 ENST00000672854.1:87 ENST00000682346.1:160 ENST00000504454.5:188 AK299767:188 ENST00000357077.9:191 NM_020977.5:191 NM_001148.6:191 ENST00000514246.1:194 ENST00000683568.1:197 ENST00000394537.7:214 ENST00000672779.1:214 AK307601:216 X56958:252 ENST00000264366.10:267 BC172793:267 AB385222:267 Z26634:267 ENST00000683595.1:300 | |||
|annotation=promoter-TSS (NM_001354245) | |annotation=promoter-TSS (NM_001354245) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=ankyrin 2 | |gene_description=ankyrin 2 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_001354265 | |nearest_promoter_id=NM_001354265 | ||
|nearest_refseq=NM_001148 | |nearest_refseq=NM_001148 | ||
|nearest_transcripts=ENST00000682211.1:60 ENST00000671727.1:60 ENST00000671762.1:60 ENST00000672366.1:60 ENST00000672502.1:60 ENST00000672045.1:87 ENST00000672251.1:87 ENST00000672854.1:87 ENST00000682346.1:160 ENST00000504454.5:188 AK299767:188 ENST00000357077.9:191 NM_020977.5:191 NM_001148.6:191 ENST00000514246.1:194 ENST00000683568.1:197 ENST00000394537.7:214 ENST00000672779.1:214 AK307601:216 X56958:252 ENST00000264366.10:267 BC172793:267 AB385222:267 Z26634:267 ENST00000683595.1:300 | |||
|nearest_unigene=Hs.620557 | |nearest_unigene=Hs.620557 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 18:45, 15 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D3616302,EH38E2321023) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 44 |
|---|---|
| Nearest PromoterID: | NM_001354265 |
| Entrez ID: | 287 |
| Nearest Unigene: | Hs.620557 |
| Nearest Refseq: | NM_001148 |
| Nearest Ensembl: | ENSG00000145362 |
| Gene Name: | |
| Gene Alias: | ANK-2|LQT4|brank-2 |
| Gene Type: | protein-coding |
| CpG%: | 0.125000 |
| GC%: | 0.333333 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "ENST00000682211.1:60 ENST00000671727.1:60 ENST00000671762.1:60 ENST00000672366.1:60 ENST00000672502.1:60 ENST00000672045.1:87 ENST00000672251.1:87 ENST00000672854.1:87 ENST00000682346.1:160 ENST00000504454.5:188 AK299767:188 ENST00000357077.9:191 NM_020977.5:191 NM_001148.6:191 ENST00000514246.1:194 ENST00000683568.1:197 ENST00000394537.7:214 ENST00000672779.1:214 AK307601:216 X56958:252 ENST00000264366.10:267 BC172793:267 AB385222:267 Z26634:267 ENST00000683595.1:300" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.