TSS: Rfhg 61821.1: Difference between revisions

Latest revision as of 18:53, 15 March 2025

Basic information about the TSS

TSS ID:	rfhg_61821.1
Species:	human
Chr:	chr4

Start:	121952012
End:	121952082
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000379645.8:0
GeneID:	7222
HGNC/MGI_ID:	HGNC:12335
UniProt_ID:	Q13507
Nearer transcript ids and distances:	AY865574:258

Gene_name:	transient receptor potential cation channel subfamily C member 3
Gene_symbol:	TRPC3
Gene_synonyms:
Gene_source:	HGNC:12335

TATA-Box annotation

Distance to TSS:	13
Nearest PromoterID:	NM_001130698
Entrez ID:	7222
Nearest Unigene:	Hs.150981
Nearest Refseq:	NM_003305
Nearest Ensembl:	ENSG00000138741
Gene Name:	transient receptor potential cation channel subfamily C member 3
Gene Alias:	SCA41\|TRP3
Gene Type:	protein-coding
CpG%:	0.057143
GC%:	0.591549
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000379645.8:0 NM_001130698.2:0 NM_001366479.2:0 AY865574:258
 |annotation=promoter-TSS (NM_001366479)
 |ccre_category=N
@@ Line 15: / Line 16: @@
 |gene_description=transient receptor potential cation channel subfamily C member 3
 |gene_id=7222
-|gene_name=TRPC3
+|gene_name=transient receptor potential cation channel subfamily C member 3
 |gene_source=HGNC:12335
 |gene_symbol=TRPC3
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001130698
 |nearest_refseq=NM_003305
+|nearest_transcripts=AY865574:258
 |nearest_unigene=Hs.150981
 |peak_score=1