TSS: Rfhg 6396.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=MP015377:-25 EU832448:-31 EU832531:-31 BC021622:58 ENST00000262741.10:71 NM_003629.4:71 NM_001328652.2:71 NM_001303429.2:71 NM_001328653.2:71 NM_001328654.2:71 NR_137329.2:71 CR749649:71 ENST00000372006.5:-80 NM_001303428.1:-81 BX537388:-81 ENST00000423209.5:84 AF028785:93 ENST00000493202.1:-197 ENST00000425892.2:-199 BC094768:-201 ENST00000420542.5:-322 NM_001114172.1:-322 NM_001328649.1:-322 AK313726:-322 D88532:327 | |||
|annotation=promoter-TSS (NM_001328653) | |annotation=promoter-TSS (NM_001328653) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=phosphoinositide-3-kinase regulatory subunit 3 | |gene_description=phosphoinositide-3-kinase regulatory subunit 3 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_003629 | |nearest_promoter_id=NM_003629 | ||
|nearest_refseq=NM_003629 | |nearest_refseq=NM_003629 | ||
|nearest_transcripts=EU832448:-31 EU832531:-31 BC021622:58 ENST00000262741.10:71 NM_003629.4:71 NM_001328652.2:71 NM_001303429.2:71 NM_001328653.2:71 NM_001328654.2:71 NR_137329.2:71 CR749649:71 ENST00000372006.5:-80 NM_001303428.1:-81 BX537388:-81 ENST00000423209.5:84 AF028785:93 ENST00000493202.1:-197 ENST00000425892.2:-199 BC094768:-201 ENST00000420542.5:-322 NM_001114172.1:-322 NM_001328649.1:-322 AK313726:-322 D88532:327 | |||
|nearest_unigene=Hs.655387 | |nearest_unigene=Hs.655387 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 19:33, 15 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2160867,EH38E1344458) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -78 |
|---|---|
| Nearest PromoterID: | NM_003629 |
| Entrez ID: | 8503 |
| Nearest Unigene: | Hs.655387 |
| Nearest Refseq: | NM_003629 |
| Nearest Ensembl: | ENSG00000117461 |
| Gene Name: | |
| Gene Alias: | p55|p55-GAMMA|p55PIK |
| Gene Type: | protein-coding |
| CpG%: | 0.142857 |
| GC%: | 0.800000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "EU832448:-31 EU832531:-31 BC021622:58 ENST00000262741.10:71 NM_003629.4:71 NM_001328652.2:71 NM_001303429.2:71 NM_001328653.2:71 NM_001328654.2:71 NR_137329.2:71 CR749649:71 ENST00000372006.5:-80 NM_001303428.1:-81 BX537388:-81 ENST00000423209.5:84 AF028785:93 ENST00000493202.1:-197 ENST00000425892.2:-199 BC094768:-201 ENST00000420542.5:-322 NM_001114172.1:-322 NM_001328649.1:-322 AK313726:-322 D88532:327" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.