TSS: Hg 102429.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=9066 |entrez_id=2516 |gc_percent=0.517413 |gene_alias=AD4BP|ELP|FTZ1|FTZF1|POF7|SF-1|SF1|SPGF8|SRXY3|hSF-1 |gene_description=nuc...") |
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{{TSSDetail | {{TSSDetail | ||
|ELP= | |||
|FTZ1= | |||
|FTZF1= | |||
|POF7= | |||
|SF-1= | |||
|SF1= | |||
|SPGF8= | |||
|SRXY3= | |||
|chr=chr9 | |||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance_to_tss= | |distance=NA | ||
|distance_to_tss=9045 | |||
|end=124498372 | |||
|end_of_center_position=124498355 | |||
|entrez_id=2516 | |entrez_id=2516 | ||
|gc_percent=0.517413 | |gc_percent=0.517413 | ||
|gene_alias=AD4BP | |gene_alias=AD4BP{{!}}ELP{{!}}FTZ1{{!}}FTZF1{{!}}POF7{{!}}SF-1{{!}}SF1{{!}}SPGF8{{!}}SRXX4{{!}}SRXY3{{!}}hSF-1 | ||
|gene_description=nuclear receptor subfamily 5 group A member 1 | |gene_description=nuclear receptor subfamily 5 group A member 1 | ||
|gene_name=NR5A1 | |gene_name=NR5A1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hSF-1= | |||
|nearest_ensembl=ENSG00000136931 | |nearest_ensembl=ENSG00000136931 | ||
|nearest_promoter_id=NM_004959 | |nearest_promoter_id=NM_004959 | ||
|nearest_refseq=NM_004959 | |nearest_refseq=NM_004959 | ||
|nearest_unigene=Hs.495108 | |nearest_unigene=Hs.495108 | ||
|tata_box= | |num_trans=0 | ||
|species=human | |||
|start=124498336 | |||
|start_of_center_position=124498354 | |||
|strand=- | |||
|tata_box=28(TTCTCTAAAGGG,-,0.00) | |||
|transcript_name= | |||
|tss_classification=yes | |||
|tss_id=hg_102429.1 | |tss_id=hg_102429.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 18:24, 12 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 9045 |
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| Nearest PromoterID: | NM_004959 |
| Entrez ID: | 2516 |
| Nearest Unigene: | Hs.495108 |
| Nearest Refseq: | NM_004959 |
| Nearest Ensembl: | ENSG00000136931 |
| Gene Name: | NR5A1 |
| Gene Alias: | AD4BP|ELP|FTZ1|FTZF1|POF7|SF-1|SF1|SPGF8|SRXX4|SRXY3|hSF-1 |
| Gene Description: | nuclear receptor subfamily 5 group A member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 28(TTCTCTAAAGGG,-,0.00) |