TSS: Rfhg 72407.1: Difference between revisions

Latest revision as of 22:12, 15 March 2025

Basic information about the TSS

TSS ID:	rfhg_72407.1
Species:	human
Chr:	chr5

Start:	135579154
End:	135579181
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3762937,EH38E2411027)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001349345.2:0 NM_001349335.2:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000514446.1:4 ENST00000646290.1:21 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	2
Nearest PromoterID:	NM_001349335
Entrez ID:	153328
Nearest Unigene:	Hs.412418
Nearest Refseq:	NM_145282
Nearest Ensembl:	ENSG00000145832
Gene Name:
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.185185
GC%:	0.750000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001349345.2:0 NM_001349335.2:0 ENST00000514446.1:4 ENST00000646290.1:21
 |annotation=promoter-TSS (NM_001349345)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=solute carrier family 25 member 48
 |gene_id=
-|gene_name=SLC25A48
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001349335
 |nearest_refseq=NM_145282
+|nearest_transcripts=ENST00000514446.1:4 ENST00000646290.1:21
 |nearest_unigene=Hs.412418
 |peak_score=1