TSS: Rfhg 74154.1: Difference between revisions

Latest revision as of 22:45, 15 March 2025

Basic information about the TSS

TSS ID:	rfhg_74154.1
Species:	human
Chr:	chr5

Start:	150486179
End:	150486193
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3776547,EH38E2421048)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NR_105061.1:187
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000519040.1:211

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-194
Nearest PromoterID:	NR_105061
Entrez ID:	102546298
Nearest Unigene:	Hs.570892
Nearest Refseq:	NR_105061
Nearest Ensembl:	ENSG00000254333
Gene Name:
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.071429
GC%:	0.800000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NR_105061.1:187 ENST00000519040.1:211
 |annotation=promoter-TSS (NR_105061)
 |ccre_category=pELS
@@ Line 15: / Line 16: @@
 |gene_description=NDST1 antisense RNA 1
 |gene_id=
-|gene_name=NDST1-AS1
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_105061
 |nearest_refseq=NR_105061
+|nearest_transcripts=ENST00000519040.1:211
 |nearest_unigene=Hs.570892
 |peak_score=1