TSS: Rfhg 77371.1: Difference between revisions

Latest revision as of 23:45, 15 March 2025

Basic information about the TSS

TSS ID:	rfhg_77371.1
Species:	human
Chr:	chr6

Start:	4079070
End:	4079070
Strand:	+

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3806481,EH38E2441328)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000643110.1:139 BC047663:139
GeneID:	404220
HGNC/MGI_ID:	HGNC:21620
UniProt_ID:
Nearer transcript ids and distances:	ENST00000427996.5:147 BC066986:147 view more...

Gene_name:	testis expressed 56, pseudogene
Gene_symbol:	TEX56P
Gene_synonyms:	dJ1013A10.5
Gene_source:	HGNC:21620

TATA-Box annotation

Distance to TSS:	67
Nearest PromoterID:	NM_173563
Entrez ID:	222826
Nearest Unigene:	Hs.657342
Nearest Refseq:	NM_173563
Nearest Ensembl:	ENSG00000145975
Gene Name:	testis expressed 56, pseudogene
Gene Alias:	C6orf146
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000643110.1:139 NR_172628.1:139 NR_104464.3:139 NR_172627.1:139 NR_104463.3:139 BC047663:139 ENST00000427996.5:147 BC066986:147
 |annotation=promoter-TSS (NR_104463)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=family with sequence similarity 217 member A
 |gene_id=404220
-|gene_name=FAM217A
+|gene_name=testis expressed 56, pseudogene
 |gene_source=HGNC:21620
 |gene_symbol=TEX56P
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_173563
 |nearest_refseq=NM_173563
+|nearest_transcripts=ENST00000427996.5:147 BC066986:147
 |nearest_unigene=Hs.657342
 |peak_score=1