TSS: Rfhg 79319.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans= | |||
|annotation=promoter-TSS (NM_003531) | |annotation=promoter-TSS (NM_003531) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=histone cluster 1 H3 family member c | |gene_description=histone cluster 1 H3 family member c | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_003531 | |nearest_promoter_id=NM_003531 | ||
|nearest_refseq=NM_003531 | |nearest_refseq=NM_003531 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.248176 | |nearest_unigene=Hs.248176 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 00:21, 16 March 2025
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3826659,EH38E2455692) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -240 |
|---|---|
| Nearest PromoterID: | NM_003531 |
| Entrez ID: | 8352 |
| Nearest Unigene: | Hs.248176 |
| Nearest Refseq: | NM_003531 |
| Nearest Ensembl: | ENSG00000278272 |
| Gene Name: | |
| Gene Alias: | H3.1|H3/c|H3FC |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.214286 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |