TSS: Rfhg 81156.1: Difference between revisions

Latest revision as of 00:56, 16 March 2025

Basic information about the TSS

TSS ID:	rfhg_81156.1
Species:	human
Chr:	chr6

Start:	32473534
End:	32473545
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D3832293,EH38E2459990)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	M35980:8
GeneID:
HGNC/MGI_ID:
UniProt_ID:	O19721
Nearer transcript ids and distances:	ENST00000449413.1:34

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	33652
Nearest PromoterID:	NM_019111
Entrez ID:	3122
Nearest Unigene:	Hs.520048
Nearest Refseq:	NM_019111
Nearest Ensembl:	ENSG00000204287
Gene Name:
Gene Alias:	HLA-DRA1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=M35980:8 ENST00000449413.1:34
 |annotation=Intergenic
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=major histocompatibility complex, class II, DR alpha
 |gene_id=
-|gene_name=HLA-DRA
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_019111
 |nearest_refseq=NM_019111
+|nearest_transcripts=ENST00000449413.1:34
 |nearest_unigene=Hs.520048
 |peak_score=1