TSS: Rfhg 82927.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000481352.6:0 ENST00000512472.5:0 ENST00000372344.6:0 ENST00000642195.1:0 ENST00000643799.1:0 ENST00000304004.7:0 ENST00000646700.1:0 ENST00000646433.1:0 ENST00000607635.2:0 ENST00000645141.1:0 ENST00000488601.6:0 ENST00000643341.1:0 NM_203290.4:0 NM_001363658.2:0 NM_001318876.2:0 AF047441:0 AK293561:0 AF008442:0 BC008863:0 CU679155:0 AB527741:0 HQ448228:0 KJ892793:0 ENST00000423780.1:1 ENST00000455605.2:22 BC008118:22 LF210862:-48 MA446439:-48 LF341591:411 MA577168:411
|annotation=promoter-TSS (NM_015388)
|annotation=promoter-TSS (NM_015388)
|ccre_category=PLS
|ccre_category=PLS
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|gene_description=RNA polymerase I and III subunit C
|gene_description=RNA polymerase I and III subunit C
|gene_id=9533
|gene_id=9533
|gene_name=POLR1C
|gene_name=RNA polymerase I and III subunit C
|gene_source=HGNC:20194
|gene_source=HGNC:20194
|gene_symbol=POLR1C
|gene_symbol=POLR1C
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|nearest_promoter_id=NM_001363658
|nearest_promoter_id=NM_001363658
|nearest_refseq=NM_004875
|nearest_refseq=NM_004875
|nearest_transcripts=ENST00000423780.1:1 ENST00000455605.2:22 BC008118:22 LF210862:-48 MA446439:-48 LF341591:411 MA577168:411
|nearest_unigene=Hs.743509
|nearest_unigene=Hs.743509
|peak_score=1
|peak_score=1

Latest revision as of 01:30, 16 March 2025

Basic information about the TSS

TSS ID:rfhg_82927.1
TSS ID(Version3):hg_67916.1
Species:human
Chr:chr6
Start:43517045
End:43517111
Strand:+
Source datasetsFANTOM5|EPD|DBTSS|DRA000914|ENCODE|PRJNA615891|PRJNA4843412
|DRA013844|PRJNA401781|PRJDB5282|PRJNA548673|PRJNA597322
ProtocolCAGE|TSS_database|TSS-seq|TIF-seq2|NETCAGE|oligo_capping
|SLIC_CAGE|RAMPAGE|C1CAGE|ReCappable-seq|STRIPE-seq
TSS cluster detected*16

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3843611,EH38E2468567)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000481352.6:0
ENST00000512472.5:0
ENST00000372344.6:0
ENST00000642195.1:0
ENST00000643799.1:0
ENST00000304004.7:0
ENST00000646700.1:0
ENST00000646433.1:0
ENST00000607635.2:0
ENST00000645141.1:0
ENST00000488601.6:0
ENST00000643341.1:0
AF047441:0
AK293561:0
AF008442:0
BC008863:0
CU679155:0
AB527741:0
HQ448228:0
GeneID:9533
HGNC/MGI_ID:HGNC:20194
UniProt_ID:A0A2R8Y5D3 A0A2R8Y8D6 A0A2R8YEZ4 B4DEC2 E7EQB9 O15160
Nearer transcript ids and distances:
  • ENST00000423780.1:1
  • ENST00000455605.2:22
  • BC008118:22
  • LF210862:-48
  • MA446439:-48
  • LF341591:411
  • MA577168:411
view more...
Gene_name:RNA polymerase I and III subunit C
Gene_symbol:POLR1C
Gene_synonyms:AC40 RPA39 RPA40 RPA5 RPAC1 RPC40
Gene_source:HGNC:20194



TATA-Box annotation

Distance to TSS:-11
Nearest PromoterID:NM_001363658
Entrez ID:9533
Nearest Unigene:Hs.743509
Nearest Refseq:NM_004875
Nearest Ensembl:ENSG00000171453
Gene Name:RNA polymerase I and III subunit C
Gene Alias:AC40|HLD11|RPA39|RPA40|RPA5|RPAC1|RPC40|TCS3
Gene Type:protein-coding
CpG%:0.090909
GC%:0.552239
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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