TSS: Rfhg 86736.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000339697.5:0 NM_020755.4:0 BC033029:0 AL137261:0 BC028607:0 AY358429:0 AB033079:0 AK075339:0 AF164794:0 AK128781:0 BC014412:0 HQ448235:14 JF432159:14 KJ899346:14 AB384156:14 KJ906278:14 CU689596:14 CU688532:14 AF087902:-28
|annotation=promoter-TSS (NM_001270394)
|annotation=promoter-TSS (NM_001270394)
|ccre_category=PLS
|ccre_category=PLS
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|gene_description=serine incorporator 1
|gene_description=serine incorporator 1
|gene_id=57515
|gene_id=57515
|gene_name=SERINC1
|gene_name=serine incorporator 1
|gene_source=HGNC:13464
|gene_source=HGNC:13464
|gene_symbol=SERINC1
|gene_symbol=SERINC1
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|nearest_promoter_id=NM_020755
|nearest_promoter_id=NM_020755
|nearest_refseq=NM_020755
|nearest_refseq=NM_020755
|nearest_transcripts=HQ448235:14 JF432159:14 KJ899346:14 AB384156:14 KJ906278:14 CU689596:14 CU688532:14 AF087902:-28
|nearest_unigene=Hs.146668
|nearest_unigene=Hs.146668
|peak_score=1
|peak_score=1

Latest revision as of 02:42, 16 March 2025

Basic information about the TSS

TSS ID:rfhg_86736.1
TSS ID(Version3):hg_75362.1
hg_75363.1
Species:human
Chr:chr6
Start:122471751
End:122471853
Strand:-
Source datasetsFANTOM5|PRJNA548673|PRJDB5282|PRJNA4843412|DRA013844
|PRJNA401781|PRJNA615891|PRJNA597322
ProtocolCAGE|ReCappable-seq|C1CAGE|NETCAGE|RAMPAGE|SLIC_CAGE
|TIF-seq2|STRIPE-seq|oligo_capping
TSS cluster detected*12

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3894181,EH38E2499144)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000339697.5:0
BC033029:0
AL137261:0
BC028607:0
AY358429:0
AB033079:0
AK075339:0
AF164794:0
BC014412:0
GeneID:57515
HGNC/MGI_ID:HGNC:13464
UniProt_ID:Q9NRX5
Nearer transcript ids and distances:
  • HQ448235:14
  • JF432159:14
  • KJ899346:14
  • AB384156:14
  • KJ906278:14
  • CU689596:14
  • CU688532:14
  • AF087902:-28
view more...
Gene_name:serine incorporator 1
Gene_symbol:SERINC1
Gene_synonyms:KIAA1253 TDE1L TMS-2
Gene_source:HGNC:13464



TATA-Box annotation

Distance to TSS:5
Nearest PromoterID:NM_020755
Entrez ID:57515
Nearest Unigene:Hs.146668
Nearest Refseq:NM_020755
Nearest Ensembl:ENSG00000111897
Gene Name:serine incorporator 1
Gene Alias:TDE1L|TDE2|TMS-2|TMS2
Gene Type:protein-coding
CpG%:0.078431
GC%:0.533981
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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