TSS: Rfhg 90513.1: Difference between revisions

Latest revision as of 03:53, 16 March 2025

Basic information about the TSS

TSS ID:	rfhg_90513.1
Species:	human
Chr:	chr7

Start:	561880
End:	561888
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D3935990,EH38E2527684)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000453149.1:70
GeneID:	101927000
HGNC/MGI_ID:	HGNC:40469
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	PRKAR1B antisense RNA 2
Gene_symbol:	PRKAR1B-AS2
Gene_synonyms:
Gene_source:	HGNC:40469

TATA-Box annotation

Distance to TSS:	-74
Nearest PromoterID:	NR_132384
Entrez ID:	101927000
Nearest Unigene:	Hs.551793
Nearest Refseq:	NR_132384
Nearest Ensembl:	ENSG00000229380
Gene Name:	PRKAR1B antisense RNA 2
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.555556
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000453149.1:70 NR_132384.1:70
 |annotation=promoter-TSS (NR_132384)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=uncharacterized LOC101927000
 |gene_id=101927000
-|gene_name=LOC101927000
+|gene_name=PRKAR1B antisense RNA 2
 |gene_source=HGNC:40469
 |gene_symbol=PRKAR1B-AS2
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_132384
 |nearest_refseq=NR_132384
+|nearest_transcripts=
 |nearest_unigene=Hs.551793
 |peak_score=1