TSS: Rfhg 91945.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000405844.6:0 ENST00000422233.5:0 ENST00000433641.5:0 NM_001366625.1:0 NM_001366626.1:0 NM_001363562.2:0 NM_001366627.1:0 NM_001366628.1:0 BC030104:0 ENST00000405764.7:177 BX647256:177 ENST00000493519.2:376 | |||
|annotation=promoter-TSS (NM_001363562) | |annotation=promoter-TSS (NM_001363562) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|gene_description=transmembrane protein 196 | |gene_description=transmembrane protein 196 | ||
|gene_id=256130 | |gene_id=256130 | ||
|gene_name= | |gene_name=transmembrane protein 196 | ||
|gene_source=HGNC:22431 | |gene_source=HGNC:22431 | ||
|gene_symbol=TMEM196 | |gene_symbol=TMEM196 | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_001366627 | |nearest_promoter_id=NM_001366627 | ||
|nearest_refseq=NM_152774 | |nearest_refseq=NM_152774 | ||
|nearest_transcripts=ENST00000405764.7:177 BX647256:177 ENST00000493519.2:376 | |||
|nearest_unigene=Hs.487670 | |nearest_unigene=Hs.487670 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 04:19, 16 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3951516,EH38E2538119) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 16 |
|---|---|
| Nearest PromoterID: | NM_001366627 |
| Entrez ID: | 256130 |
| Nearest Unigene: | Hs.487670 |
| Nearest Refseq: | NM_152774 |
| Nearest Ensembl: | ENSG00000173452 |
| Gene Name: | transmembrane protein 196 |
| Gene Alias: | - |
| Gene Type: | protein-coding |
| CpG%: | 0.079365 |
| GC%: | 0.640625 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.