TSS: Rfhg 95033.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000448096.1:0 ENST00000439360.5:0 ENST00000656515.1:0 NM_001367722.1:0 NM_001367728.1:0 NM_001367741.1:0 NM_001367737.1:0 NM_001367752.1:0 NM_001367726.1:0 NM_001367725.1:0 NM_001367727.1:0 ENST00000657342.1:5 NR_110037.1:-12 ENST00000428557.1:13
|annotation=promoter-TSS (NM_001367741)
|annotation=promoter-TSS (NM_001367741)
|ccre_category=PLS
|ccre_category=PLS
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|gene_description=RAB guanine nucleotide exchange factor 1
|gene_description=RAB guanine nucleotide exchange factor 1
|gene_id=
|gene_id=
|gene_name=RABGEF1
|gene_name=
|gene_source=
|gene_source=
|gene_symbol=
|gene_symbol=
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|nearest_promoter_id=NM_001367752
|nearest_promoter_id=NM_001367752
|nearest_refseq=NM_014504
|nearest_refseq=NM_014504
|nearest_transcripts=ENST00000657342.1:5 NR_110037.1:-12 ENST00000428557.1:13
|nearest_unigene=Hs.530053
|nearest_unigene=Hs.530053
|peak_score=1
|peak_score=1

Latest revision as of 05:15, 16 March 2025

Basic information about the TSS

TSS ID:rfhg_95033.1
TSS ID(Version3):hg_78879.1
hg_78878.1
hg_78880.1
Species:human
Chr:chr7
Start:66654531
End:66654573
Strand:+
Source datasetsFANTOM5|PRJNA401781|PRJNA4843412|DRA013844|PRJNA597322
|PRJNA548673|PRJNA615891
ProtocolCAGE|RAMPAGE|NETCAGE|STRIPE-seq|oligo_capping
|ReCappable-seq|SLIC_CAGE|TIF-seq2
TSS cluster detected*11

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3984130,EH38E2560209)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000448096.1:0
ENST00000439360.5:0
ENST00000656515.1:0
NM_001367722.1:0
NM_001367728.1:0
NM_001367741.1:0
NM_001367737.1:0
NM_001367752.1:0
NM_001367726.1:0
NM_001367725.1:0
NM_001367727.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000657342.1:5
  • NR_110037.1:-12
  • ENST00000428557.1:13
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-15
Nearest PromoterID:NM_001367752
Entrez ID:27342
Nearest Unigene:Hs.530053
Nearest Refseq:NM_014504
Nearest Ensembl:ENSG00000154710
Gene Name:
Gene Alias:RABEX5|RAP1|rabex-5
Gene Type:protein-coding
CpG%:0.071429
GC%:0.651163
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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