TSS: Rfhg 96340.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000417207.5:0 ENST00000477972.1:0 ENST00000380058.7:0 ENST00000222511.11:0 ENST00000439832.5:0 NM_001042717.3:0 NM_033107.4:0 AK095561:0 BC107714:0 CR933597:0 AK294325:0 BC144162:0 ENST00000257659.12:-4 AF351613:-4 LF206770:-5 MA442347:-5 LF357626:343 MA593203:343 LF357625:422 MA593202:422 | |||
|annotation=promoter-TSS (NM_033107) | |annotation=promoter-TSS (NM_033107) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|gene_description=GTP binding protein 10 | |gene_description=GTP binding protein 10 | ||
|gene_id=85865 | |gene_id=85865 | ||
|gene_name= | |gene_name=GTP binding protein 10 | ||
|gene_source=HGNC:25106 | |gene_source=HGNC:25106 | ||
|gene_symbol=GTPBP10 | |gene_symbol=GTPBP10 | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_033107 | |nearest_promoter_id=NM_033107 | ||
|nearest_refseq=NM_033107 | |nearest_refseq=NM_033107 | ||
|nearest_transcripts=ENST00000257659.12:-4 AF351613:-4 LF206770:-5 MA442347:-5 LF357626:343 MA593203:343 LF357625:422 MA593202:422 | |||
|nearest_unigene=Hs.593547 | |nearest_unigene=Hs.593547 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 05:41, 16 March 2025
Basic information about the TSS
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| Source datasets | PRJNA4843412|DRA013844|PRJNA548673|PRJDB5282|PRJNA401781 |PRJNA615891 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | NETCAGE|CAGE|ReCappable-seq|C1CAGE|RAMPAGE|SLIC_CAGE |oligo_capping|TIF-seq2 | |||||||||||||
| TSS cluster detected* | 10 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4000434,EH38E2570336) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -13 |
|---|---|
| Nearest PromoterID: | NM_033107 |
| Entrez ID: | 85865 |
| Nearest Unigene: | Hs.593547 |
| Nearest Refseq: | NM_033107 |
| Nearest Ensembl: | ENSG00000105793 |
| Gene Name: | GTP binding protein 10 |
| Gene Alias: | ObgH2|UG0751c10 |
| Gene Type: | protein-coding |
| CpG%: | 0.086957 |
| GC%: | 0.571429 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.