TSS: Rfhg 98038.1: Difference between revisions

Latest revision as of 06:12, 16 March 2025

Basic information about the TSS

TSS ID:	rfhg_98038.1
Species:	human
Chr:	chr7

Start:	102973331
End:	102973347
Strand:	+

Source datasets

PRJNA597322

Protocol

STRIPE-seq

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4010528,EH38E2577494)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NR_166513.1:83 NR_166512.1:83 NR_166510.1:83 NR_166511.1:83
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	AY258907:90 ENST00000420058.1:175 BC036938:175 AB590482:211 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-91
Nearest PromoterID:	NM_001085386
Entrez ID:	58160
Nearest Unigene:	Hs.621233
Nearest Refseq:	NM_001085386
Nearest Ensembl:	ENSG00000230257
Gene Name:
Gene Alias:	NF-E4
Gene Type:	protein-coding
CpG%:	0.062500
GC%:	0.647059
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NR_166513.1:83 NR_166512.1:83 NR_166510.1:83 NR_166511.1:83 AY258907:90 ENST00000420058.1:175 BC036938:175 AB590482:211
 |annotation=promoter-TSS (NM_001085386)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=nuclear factor, erythroid 4
 |gene_id=
-|gene_name=NFE4
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001085386
 |nearest_refseq=NM_001085386
+|nearest_transcripts=AY258907:90 ENST00000420058.1:175 BC036938:175 AB590482:211
 |nearest_unigene=Hs.621233
 |peak_score=1