TSS: Rfhg 99010.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=NM_001206748.2:-138 ENST00000495841.1:-140 AB451417:-402 AB489180:-402 AM393815:-402 CR407685:-402 AB451285:-402 BT007051:-402 KJ890833:-402 ENST00000393480.3:-404 AF035752:-422 AK311964:-425 ENST00000343213.2:-444 AK310786:-444 ENST00000222693.5:-446 NM_198212.3:-446 NM_001206747.2:-446 NM_001233.5:-446 | |||
|annotation=5' UTR (NM_001206748, exon 1 of 2) | |annotation=5' UTR (NM_001206748, exon 1 of 2) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
| Line 15: | Line 16: | ||
|gene_description=caveolin 2 | |gene_description=caveolin 2 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_001206748 | |nearest_promoter_id=NM_001206748 | ||
|nearest_refseq=NM_001233 | |nearest_refseq=NM_001233 | ||
|nearest_transcripts=ENST00000495841.1:-140 AB451417:-402 AB489180:-402 AM393815:-402 CR407685:-402 AB451285:-402 BT007051:-402 KJ890833:-402 ENST00000393480.3:-404 AF035752:-422 AK311964:-425 ENST00000343213.2:-444 AK310786:-444 ENST00000222693.5:-446 NM_198212.3:-446 NM_001206747.2:-446 NM_001233.5:-446 | |||
|nearest_unigene=Hs.212332 | |nearest_unigene=Hs.212332 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 06:30, 16 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|EPD | |||||||||||||
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| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D4020624,EH38E2583942) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 145 |
|---|---|
| Nearest PromoterID: | NM_001206748 |
| Entrez ID: | 858 |
| Nearest Unigene: | Hs.212332 |
| Nearest Refseq: | NM_001233 |
| Nearest Ensembl: | ENSG00000105971 |
| Gene Name: | |
| Gene Alias: | CAV |
| Gene Type: | protein-coding |
| CpG%: | 0.133333 |
| GC%: | 0.750000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "ENST00000495841.1:-140 AB451417:-402 AB489180:-402 AM393815:-402 CR407685:-402 AB451285:-402 BT007051:-402 KJ890833:-402 ENST00000393480.3:-404 AF035752:-422 AK311964:-425 ENST00000343213.2:-444 AK310786:-444 ENST00000222693.5:-446 NM_198212.3:-446 NM_001206747.2:-446 NM_001233.5:-446" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.