TSS: Rfmm 100038.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENSMUST00000105272.8:0 ENSMUST00000149008.2:0 ENSMUST00000129309.2:0 AK047873:0 AK134981:0 ENSMUST00000020350.15:-12 NM_010195.2:-12 AK132387:-12 BC156649:243 ENSMUST00000172806.8:247 ENSMUST00000173740.2:247 AF110818:247 | |||
|annotation=promoter-TSS (NM_010195.2) | |annotation=promoter-TSS (NM_010195.2) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description= | |gene_description= | ||
|gene_id=14160 | |gene_id=14160 | ||
|gene_name= | |gene_name=leucine rich repeat containing G protein coupled receptor 5 | ||
|gene_source=MGI:1341817 | |gene_source=MGI:1341817 | ||
|gene_symbol=Lgr5 | |gene_symbol=Lgr5 | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_010195.2 | |nearest_promoter_id=NM_010195.2 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts=ENSMUST00000020350.15:-12 NM_010195.2:-12 AK132387:-12 BC156649:243 ENSMUST00000172806.8:247 ENSMUST00000173740.2:247 AF110818:247 | |||
|nearest_unigene=NM_010195 | |nearest_unigene=NM_010195 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 16:43, 18 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|EPD|DRA000914 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database|CAGE_and_CAGEscan | |||||||||||||
| TSS cluster detected* | 3 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D2342091,EM10E0964639) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 26 |
|---|---|
| Nearest PromoterID: | NM_010195.2 |
| Entrez ID: | Lgr5 |
| Nearest Unigene: | NM_010195 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | leucine rich repeat containing G protein coupled receptor 5 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.035714 |
| GC%: | 0.620690 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.