TSS: Rfmm 100156.1: Difference between revisions

Latest revision as of 16:45, 18 March 2025

Basic information about the TSS

TSS ID:	rfmm_100156.1
Species:	mouse
Chr:	chr10

Start:	116881252
End:	116881268
Strand:	+

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS (EM10D2342611,EM10E0964817)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AK085779:0 AF527781:0 AK142167:0 AK084466:0
GeneID:	237560
HGNC/MGI_ID:	MGI:2448063
UniProt_ID:	Q3UQT4
Nearer transcript ids and distances:	ENSMUST00000073834.5:-6 NM_146242.2:-6 BC086911:-6 AB091100:8 view more...

Gene_name:	leucine rich repeat containing 10
Gene_symbol:	Lrrc10
Gene_synonyms:	D330003I11Rik Hrlrrp Serdin1
Gene_source:	MGI:2448063

TATA-Box annotation

Distance to TSS:	14
Nearest PromoterID:	NM_146242.2
Entrez ID:	Lrrc10
Nearest Unigene:	NM_146242
Nearest Refseq:
Nearest Ensembl:
Gene Name:	leucine rich repeat containing 10
Gene Alias:
Gene Type:
CpG%:	0.062500
GC%:	0.647059
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=AK085779:0 AF527781:0 AK142167:0 AK084466:0 ENSMUST00000073834.5:-6 NM_146242.2:-6 BC086911:-6 AB091100:8
 |annotation=promoter-TSS (NM_146242.2)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=
 |gene_id=237560
-|gene_name=Lrrc10
+|gene_name=leucine rich repeat containing 10
 |gene_source=MGI:2448063
 |gene_symbol=Lrrc10
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_146242.2
 |nearest_refseq=
+|nearest_transcripts=ENSMUST00000073834.5:-6 NM_146242.2:-6 BC086911:-6 AB091100:8
 |nearest_unigene=NM_146242
 |peak_score=1