TSS: Rfmm 101276.1: Difference between revisions

Latest revision as of 17:04, 18 March 2025

Basic information about the TSS

TSS ID:	rfmm_101276.1
Species:	mouse
Chr:	chr10

Start:	128579831
End:	128579841
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS,CTCF-bound (EM10D2347729,EM10E0967137)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001374028.1:84
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	BC006713:-84 ENSMUST00000026414.9:-103 JN832678:-103 JN832679:-103 JN832683:-103 NM_016811.3:-104 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-89
Nearest PromoterID:	NM_001374028.1
Entrez ID:	Dgka
Nearest Unigene:	XR_001779449
Nearest Refseq:
Nearest Ensembl:
Gene Name:
Gene Alias:
Gene Type:
CpG%:	0.100000
GC%:	0.727273
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001374028.1:84 BC006713:-84 ENSMUST00000026414.9:-103 JN832678:-103 JN832679:-103 JN832683:-103 NM_016811.3:-104
 |annotation=promoter-TSS (NM_001374028.1)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=
 |gene_id=
-|gene_name=Dgka
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001374028.1
 |nearest_refseq=
+|nearest_transcripts=BC006713:-84 ENSMUST00000026414.9:-103 JN832678:-103 JN832679:-103 JN832683:-103 NM_016811.3:-104
 |nearest_unigene=XR_001779449
 |peak_score=1