TSS: Mm 144087.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK082664:-39 AK038331:-39 ENSMUST00000182639.1:-40 NR_045963:-40 NR_045964:-40 uc008dwr.2:-40 uc008dws.2:-40 AK137318:-40 |chr=chr17 |cpg_percent=0.045...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans=AK082664:-39 AK038331:-39 ENSMUST00000182639.1 | |all_trans=LF253616:4 MA489193:4 ENSMUST00000234189.1:-39 ENSMUST00000234446.1:-39 AK082664:-39 AK038331:-39 ENSMUST00000182639.1:-40 NR_045964:-40 NR_045963:-40 AK137318:-40 | ||
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
|distance= | |distance=4 | ||
|distance_to_tss=48 | |distance_to_tss=48 | ||
|end=94834759 | |end=94834759 | ||
|end_of_center_position=94834752 | |||
|entrez_id=100038746 | |entrez_id=100038746 | ||
|gc_percent=0.567164 | |gc_percent=0.567164 | ||
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|gene_description=predicted gene 1976 | |gene_description=predicted gene 1976 | ||
|gene_id=100038746 | |gene_id=100038746 | ||
|gene_name= | |gene_name=Gm1976 | ||
|gene_source=MGI:3780145 | |gene_source=MGI:3780145 | ||
|gene_symbol=Gm1976 | |gene_symbol=Gm1976 | ||
| Line 18: | Line 19: | ||
|hgnc_mgi_id=MGI:3780145 | |hgnc_mgi_id=MGI:3780145 | ||
|nearest_ensembl=ENSMUSG00000066057 | |nearest_ensembl=ENSMUSG00000066057 | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_045963 | ||
|nearest_refseq=NR_045963 | |nearest_refseq=NR_045963 | ||
|nearest_unigene=Mm.456686 | |nearest_unigene=Mm.456686 | ||
|num_trans= | |num_trans=10 | ||
|species=mouse | |species=mouse | ||
|start=94834743 | |start=94834743 | ||
|start_of_center_position=94834751 | |||
|strand=- | |strand=- | ||
|transcript_name= | |transcript_name=LF253616 MA489193 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_144087.1 | |tss_id=mm_144087.1 | ||
Latest revision as of 09:18, 20 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 48 |
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| Nearest PromoterID: | NR_045963 |
| Entrez ID: | 100038746 |
| Nearest Unigene: | Mm.456686 |
| Nearest Refseq: | NR_045963 |
| Nearest Ensembl: | ENSMUSG00000066057 |
| Gene Name: | Gm1976 |
| Gene Alias: | 100038868 |
| Gene Description: | predicted gene 1976 |
| Gene Type: | ncRNA |
| CpG%: | 0.045 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.