TSS: Rfmm 120130.1: Difference between revisions

Latest revision as of 22:16, 18 March 2025

Basic information about the TSS

TSS ID:	rfmm_120130.1
Species:	mouse
Chr:	chr12

Start:	110807456
End:	110807471
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS,CTCF-bound (EM10D2421429,EM10E1000060)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000181348.2:0 AK014831:0
GeneID:	66709
HGNC/MGI_ID:	MGI:1913959
UniProt_ID:
Nearer transcript ids and distances:	AK015341:26

Gene_name:	RIKEN cDNA 4921507G05 gene
Gene_symbol:	4921507G05Rik
Gene_synonyms:
Gene_source:	MGI:1913959

TATA-Box annotation

Distance to TSS:	0
Nearest PromoterID:	NR_152102.1
Entrez ID:	4921507G05Rik
Nearest Unigene:	NR_152102
Nearest Refseq:
Nearest Ensembl:
Gene Name:	RIKEN cDNA 4921507G05 gene
Gene Alias:
Gene Type:
CpG%:	0.200000
GC%:	0.750000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENSMUST00000181348.2:0 NR_152102.1:0 AK014831:0 AK015341:26
 |annotation=promoter-TSS (NM_011973.2)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=
 |gene_id=66709
-|gene_name=4921507G05Rik
+|gene_name=RIKEN cDNA 4921507G05 gene
 |gene_source=MGI:1913959
 |gene_symbol=4921507G05Rik
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_152102.1
 |nearest_refseq=
+|nearest_transcripts=AK015341:26
 |nearest_unigene=NR_152102
 |peak_score=1