TSS: Rfmm 129888.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans= | |||
|annotation=promoter-TSS (NM_001293635.1) | |annotation=promoter-TSS (NM_001293635.1) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description= | |gene_description= | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_001379489.1 | |nearest_promoter_id=NM_001379489.1 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts= | |||
|nearest_unigene=XM_036158499 | |nearest_unigene=XM_036158499 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 00:54, 19 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D2468936,EM10E1018610) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -72 |
|---|---|
| Nearest PromoterID: | NM_001379489.1 |
| Entrez ID: | Ktn1 |
| Nearest Unigene: | XM_036158499 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.122449 |
| GC%: | 0.740000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): | 9(GCCCCTTAAAGG,-,0.00),10(CCCCTTAAAGGG,+,0.00),10(CCCCTTAAAGGG,-,0.00),11(CCCTTAAAGGGA,+,0.00),12(CCTTAAAGGGAC,+,0.00) |