TSS: Rfmm 130291.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=U07878:29 AF479020:52 ENSMUST00000103635.3:271 L21700:271 X76971:271 M73761:339 KC202840:438 KC202833:438 KC202845:438 KC202827:438 | |||
|annotation=promoter-TSS (id-Trav14n-3) | |annotation=promoter-TSS (id-Trav14n-3) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
| Line 15: | Line 16: | ||
|gene_description= | |gene_description= | ||
|gene_id=634322 | |gene_id=634322 | ||
|gene_name= | |gene_name=T cell receptor alpha variable 14D-3-DV8 | ||
|gene_source=MGI:3822547 | |gene_source=MGI:3822547 | ||
|gene_symbol=Trav14d-3-dv8 | |gene_symbol=Trav14d-3-dv8 | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=id-Trav14n-3 | |nearest_promoter_id=id-Trav14n-3 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts=AF479020:52 ENSMUST00000103635.3:271 L21700:271 X76971:271 M73761:339 KC202840:438 KC202833:438 KC202845:438 KC202827:438 | |||
|nearest_unigene=id-Trav14n-3 | |nearest_unigene=id-Trav14n-3 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 01:01, 19 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | pELS (EM10D2470363,EM10E1019128) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -58 |
|---|---|
| Nearest PromoterID: | id-Trav14n-3 |
| Entrez ID: | Trav14n-3 |
| Nearest Unigene: | id-Trav14n-3 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | T cell receptor alpha variable 14D-3-DV8 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.000000 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.