TSS: Rfmm 150165.1: Difference between revisions

Latest revision as of 06:29, 19 March 2025

Basic information about the TSS

TSS ID:	rfmm_150165.1
Species:	mouse
Chr:	chr17

Start:	34170766
End:	34170777
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	pELS (EM10D2556594,EM10E1054357)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF201044:303 MA436621:303
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENSMUST00000087543.5:304 NM_019420.2:304 AK007600:315 AF082504:326 AK166333:339 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-309
Nearest PromoterID:	NM_019420.2
Entrez ID:	B3galt4
Nearest Unigene:	NM_019420
Nearest Refseq:
Nearest Ensembl:
Gene Name:
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF201044:303 MA436621:303 ENSMUST00000087543.5:304 NM_019420.2:304 AK007600:315 AF082504:326 AK166333:339
 |annotation=promoter-TSS (NM_019420.2)
 |ccre_category=pELS
@@ Line 15: / Line 16: @@
 |gene_description=
 |gene_id=
-|gene_name=B3galt4
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_019420.2
 |nearest_refseq=
+|nearest_transcripts=ENSMUST00000087543.5:304 NM_019420.2:304 AK007600:315 AF082504:326 AK166333:339
 |nearest_unigene=NM_019420
 |peak_score=1