TSS: Rfmm 159965.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENSMUST00000153363.3:0 AK183568:0 AK185350:0 AK187706:0 AK187751:0 AK189069:0 AK198184:0 AK218707:0 AK181260:0 AK189366:0 AK184254:0 ENSMUST00000125352.2:-254 ENSMUST00000155879.2:-259 ENSMUST00000127234.8:-277 AK011717:-277 ENSMUST00000126360.2:-278 BC003876:-302 ENSMUST00000025463.14:-305 BC014770:-305 ENSMUST00000025464.8:-309 BC031634:-312 AK171121:-324 ENSMUST00000126177.8:-326 BC025053:-327 AK004039:-330 AK007331:-336 ENSMUST00000145116.8:-342 BC029327:-344 NM_001384178.1:-346 NM_001384176.1:-346 NM_001038608.3:-346 NM_001384175.1:-346 NM_001042408.2:-346 NM_178604.4:-346 NM_001384177.1:-346 NM_025299.4:-346 NM_001384174.1:-346 NM_001384173.1:-346 NR_168914.1:-346 NR_168915.1:-346 NR_168913.1:-346 AK166497:-346 AK148287:-356 ENSMUST00000125127.8:-374 AK010599:-374 ENSMUST00000145963.9:-377 ENSMUST00000156400.9:-407
|annotation=exon (NM_001038608.3, exon 2 of 4)
|annotation=exon (NM_001038608.3, exon 2 of 4)
|ccre_category=PLS
|ccre_category=PLS
Line 15: Line 16:
|gene_description=
|gene_description=
|gene_id=117903916 27366
|gene_id=117903916 27366
|gene_name=Txnl4a
|gene_name=N(alpha)-acetyltransferase 12, NatA catalytic subunit; thioredoxin-like 4A
|gene_source=MGI:1351613 MGI:3833940
|gene_source=MGI:1351613 MGI:3833940
|gene_symbol=Naa12 Txnl4a
|gene_symbol=Naa12 Txnl4a
Line 25: Line 26:
|nearest_promoter_id=NR_168913.1
|nearest_promoter_id=NR_168913.1
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=ENSMUST00000125352.2:-254 ENSMUST00000155879.2:-259 ENSMUST00000127234.8:-277 AK011717:-277 ENSMUST00000126360.2:-278 BC003876:-302 ENSMUST00000025463.14:-305 BC014770:-305 ENSMUST00000025464.8:-309 BC031634:-312 AK171121:-324 ENSMUST00000126177.8:-326 BC025053:-327 AK004039:-330 AK007331:-336 ENSMUST00000145116.8:-342 BC029327:-344 NM_001384178.1:-346 NM_001384176.1:-346 NM_001038608.3:-346 NM_001384175.1:-346 NM_001042408.2:-346 NM_178604.4:-346 NM_001384177.1:-346 NM_025299.4:-346 NM_001384174.1:-346 NM_001384173.1:-346 NR_168914.1:-346 NR_168915.1:-346 NR_168913.1:-346 AK166497:-346 AK148287:-356 ENSMUST00000125127.8:-374 AK010599:-374 ENSMUST00000145963.9:-377 ENSMUST00000156400.9:-407
|nearest_unigene=NM_001042408
|nearest_unigene=NM_001042408
|peak_score=1
|peak_score=1

Latest revision as of 09:12, 19 March 2025

Basic information about the TSS

TSS ID:rfmm_159965.1
TSS ID(Version3):mm_146301.1
Species:mouse
Chr:chr18
Start:80250387
End:80250481
Strand:+
Source datasetsFANTOM5|PRJDB10397
ProtocolCAGE|C1CAGE
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:PLS (EM10D2597790,EM10E1071101)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENSMUST00000153363.3:0
AK187706:0
AK187751:0
AK189069:0
AK198184:0
AK218707:0
AK181260:0
AK189366:0
AK184254:0
GeneID:117903916 27366
HGNC/MGI_ID:MGI:1351613 MGI:3833940
UniProt_ID:Q9CQX6
Nearer transcript ids and distances:
  • ENSMUST00000125352.2:-254
  • ENSMUST00000155879.2:-259
  • ENSMUST00000127234.8:-277
  • AK011717:-277
  • ENSMUST00000126360.2:-278
  • BC003876:-302
  • ENSMUST00000025463.14:-305
  • BC014770:-305
  • ENSMUST00000025464.8:-309
  • BC031634:-312
  • AK171121:-324
  • ENSMUST00000126177.8:-326
  • BC025053:-327
  • AK004039:-330
  • AK007331:-336
  • ENSMUST00000145116.8:-342
  • BC029327:-344
  • NM_001384178.1:-346
  • NM_001384176.1:-346
  • NM_001038608.3:-346
  • NM_001384175.1:-346
  • NM_001042408.2:-346
  • NM_178604.4:-346
  • NM_001384177.1:-346
  • NM_025299.4:-346
  • NM_001384174.1:-346
  • NM_001384173.1:-346
  • NR_168914.1:-346
  • NR_168915.1:-346
  • NR_168913.1:-346
  • AK166497:-346
  • AK148287:-356
  • ENSMUST00000125127.8:-374
  • AK010599:-374
  • ENSMUST00000145963.9:-377
  • ENSMUST00000156400.9:-407
view more...
Gene_name:N(alpha)-acetyltransferase 12, NatA catalytic subunit; thioredoxin-like 4A
Gene_symbol:Naa12 Txnl4a
Gene_synonyms:D18Wsu98e ENSMUSG00000057130 Gm16286 Txnl4 U5-15kDa
Gene_source:MGI:1351613 MGI:3833940



TATA-Box annotation

Distance to TSS:393
Nearest PromoterID:NR_168913.1
Entrez ID:Txnl4a
Nearest Unigene:NM_001042408
Nearest Refseq:
Nearest Ensembl:
Gene Name:N(alpha)-acetyltransferase 12, NatA catalytic subunit; thioredoxin-like 4A
Gene Alias:
Gene Type:
CpG%:0.095745
GC%:0.631579
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.


















Property "Nearest transcripts" (as page type) with input value "ENSMUST00000125352.2:-254 ENSMUST00000155879.2:-259 ENSMUST00000127234.8:-277 AK011717:-277 ENSMUST00000126360.2:-278 BC003876:-302 ENSMUST00000025463.14:-305 BC014770:-305 ENSMUST00000025464.8:-309 BC031634:-312 AK171121:-324 ENSMUST00000126177.8:-326 BC025053:-327 AK004039:-330 AK007331:-336 ENSMUST00000145116.8:-342 BC029327:-344 NM_001384178.1:-346 NM_001384176.1:-346 NM_001038608.3:-346 NM_001384175.1:-346 NM_001042408.2:-346 NM_178604.4:-346 NM_001384177.1:-346 NM_025299.4:-346 NM_001384174.1:-346 NM_001384173.1:-346 NR_168914.1:-346 NR_168915.1:-346 NR_168913.1:-346 AK166497:-346 AK148287:-356 ENSMUST00000125127.8:-374 AK010599:-374 ENSMUST00000145963.9:-377 ENSMUST00000156400.9:-407" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "https://reftss.riken.jp/reftss/index.php?title=TSS:Rfmm_159965.1&oldid=3876277"