TSS: Mm 149681.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |all_trans=NR_015502:45 uc008gyk.1:45 uc012bji.1:45 uc008gyl.1:45 AK087651:45 AK086826:62 AK018993:90 |chr=chr19 |cpg_percent=0 |distance=45 |distance_to_tss=-48 |...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans= | |all_trans=MGI:1353450 MGI:2443348 | ||
|chr=chr19 | |chr=chr19 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=-48 | |distance_to_tss=-48 | ||
|end=20492670 | |end=20492670 | ||
|end_of_center_position=20492667 | |||
|entrez_id=320092 | |entrez_id=320092 | ||
|gc_percent=0.507463 | |gc_percent=0.507463 | ||
|gene_alias=1700127G21Rik | |gene_alias=1700127G21Rik | ||
|gene_description=RIKEN cDNA E030003E18 gene | |gene_description=RIKEN cDNA E030003E18 gene | ||
|gene_id=320092 | |gene_id=11668 320092 | ||
|gene_name=RIKEN cDNA E030003E18 gene | |gene_name=RIKEN cDNA E030003E18 gene; aldehyde dehydrogenase family 1, subfamily A1 | ||
|gene_source=MGI:2443348 | |gene_source=MGI:1353450 MGI:2443348 | ||
|gene_symbol=E030003E18Rik | |gene_symbol=Aldh1a1 E030003E18Rik | ||
|gene_synonyms= | |gene_synonyms=ALDH1 Ahd-2 Ahd2 E1 Raldh1 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=MGI:2443348 | |hgnc_mgi_id=MGI:1353450 MGI:2443348 | ||
|nearest_ensembl= | |nearest_ensembl=ENSMUSG00000053279 | ||
|nearest_promoter_id=NR_015502 | |nearest_promoter_id=NR_015502 | ||
|nearest_refseq=NR_015502 | |nearest_refseq=NR_015502 | ||
|nearest_unigene=Mm.482524 | |nearest_unigene=Mm.482524 | ||
|num_trans= | |num_trans=11668 320092 | ||
|species=mouse | |species=mouse | ||
|start=20492663 | |start=20492663 | ||
|start_of_center_position=20492666 | |||
|strand=+ | |strand=+ | ||
|transcript_name= | |transcript_name=ENSMUST00000224807.1 ENSMUST00000225337.2 AK087651 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_149681.1 | |tss_id=mm_149681.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id=P24549 | ||
}} | }} | ||
Latest revision as of 04:42, 27 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -48 |
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| Nearest PromoterID: | NR_015502 |
| Entrez ID: | 320092 |
| Nearest Unigene: | Mm.482524 |
| Nearest Refseq: | NR_015502 |
| Nearest Ensembl: | ENSMUSG00000053279 |
| Gene Name: | RIKEN cDNA E030003E18 gene; aldehyde dehydrogenase family 1, subfamily A1 |
| Gene Alias: | 1700127G21Rik |
| Gene Description: | RIKEN cDNA E030003E18 gene |
| Gene Type: | ncRNA |
| CpG%: | 0 |
| GC%: | 0.507463 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.