TSS: Rfmm 162826.1: Difference between revisions

Latest revision as of 10:01, 19 March 2025

Basic information about the TSS

TSS ID:	rfmm_162826.1
Species:	mouse
Chr:	chr19

Start:	16851190
End:	16851190
Strand:	-

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS (EM10D1639130,EM10E0673356)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	X92591:-4
GeneID:	14240
HGNC/MGI_ID:	MGI:1347468
UniProt_ID:
Nearer transcript ids and distances:	ENSMUST00000072915.4:21 BC139476:21 BC139477:21 BC115976:116 view more...

Gene_name:	forkhead box B2
Gene_symbol:	Foxb2
Gene_synonyms:	Fkh4
Gene_source:	MGI:1347468

TATA-Box annotation

Distance to TSS:	4
Nearest PromoterID:	NM_008023.2
Entrez ID:	Foxb2
Nearest Unigene:	NM_008023
Nearest Refseq:
Nearest Ensembl:
Gene Name:	forkhead box B2
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_008023.2:-4 X92591:-4 ENSMUST00000072915.4:21 BC139476:21 BC139477:21 BC115976:116
 |annotation=promoter-TSS (NM_008023.2)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=
 |gene_id=14240
-|gene_name=Foxb2
+|gene_name=forkhead box B2
 |gene_source=MGI:1347468
 |gene_symbol=Foxb2
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_008023.2
 |nearest_refseq=
+|nearest_transcripts=ENSMUST00000072915.4:21 BC139476:21 BC139477:21 BC115976:116
 |nearest_unigene=NM_008023
 |peak_score=1