TSS: Mm 150436.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000066439.6:0 NM_175353:0 uc029tsf.1:0 uc008hiq.1:0 AK151524:0 AK151838:0 AK082881:0 BC026859:0 |chr=chr19 |cpg_percent=0.145 |distance=0 |dist...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans= | |AW413330= | ||
|C430002C19= | |||
|Sec15= | |||
|Sec15l1= | |||
|all_trans=MGI:1351611 | |||
|chr=chr19 | |chr=chr19 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| Line 6: | Line 10: | ||
|distance_to_tss=15 | |distance_to_tss=15 | ||
|end=37550468 | |end=37550468 | ||
|end_of_center_position=37550433 | |||
|entrez_id=107371 | |entrez_id=107371 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
|gene_alias=4833405E05Rik | |gene_alias=4833405E05Rik{{!}}AW413330{{!}}C430002C19{{!}}Sec15{{!}}Sec15l1{{!}}hbd{{!}}msec15 | ||
|gene_description=exocyst complex component 6 | |gene_description=exocyst complex component 6 | ||
|gene_id=107371 | |gene_id=107371 | ||
| Line 16: | Line 21: | ||
|gene_synonyms=4833405E05Rik Sec15 Sec15l1 hbd msec15 | |gene_synonyms=4833405E05Rik Sec15 Sec15l1 hbd msec15 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hbd= | |||
|hgnc_mgi_id=MGI:1351611 | |hgnc_mgi_id=MGI:1351611 | ||
|msec15= | |||
|nearest_ensembl=ENSMUSG00000053799 | |nearest_ensembl=ENSMUSG00000053799 | ||
|nearest_promoter_id=NM_175353 | |nearest_promoter_id=NM_175353 | ||
|nearest_refseq=NM_175353 | |nearest_refseq=NM_175353 | ||
|nearest_unigene=Mm.24865 | |nearest_unigene=Mm.24865 | ||
|num_trans= | |num_trans=107371 | ||
|species=mouse | |species=mouse | ||
|start=37550397 | |start=37550397 | ||
|start_of_center_position=37550432 | |||
|strand=+ | |strand=+ | ||
|transcript_name=ENSMUST00000066439. | |transcript_name=ENSMUST00000066439.7 ENSMUST00000238817.1 AK151524 AK151838 AK082881 BC026859 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_150436.1 | |tss_id=mm_150436.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q3U9D6 Q8C670 Q8R313 | |uniprot_id=A0A5F8MPW8 Q3U9D6 Q8C670 Q8R313 | ||
}} | }} | ||
Latest revision as of 04:59, 27 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 15 |
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| Nearest PromoterID: | NM_175353 |
| Entrez ID: | 107371 |
| Nearest Unigene: | Mm.24865 |
| Nearest Refseq: | NM_175353 |
| Nearest Ensembl: | ENSMUSG00000053799 |
| Gene Name: | exocyst complex component 6 |
| Gene Alias: | 4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15 |
| Gene Description: | exocyst complex component 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.