TSS: Mm 150825.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000131032.1:0 ENSMUST00000040455.4:0 NM_176958:0 uc008hpx.1:0 uc008hpy.1:0 BC130013:0 AK154774:0 AK084960:0 AK043636:0 AK141867:0 |chr=chr19 |c...") |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|all_trans= | |A830014H24Rik= | ||
|FIH= | |||
|FIH1= | |||
|all_trans=MGI:2442345 | |||
|chr=chr19 | |chr=chr19 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| Line 6: | Line 9: | ||
|distance_to_tss=6 | |distance_to_tss=6 | ||
|end=44562879 | |end=44562879 | ||
|end_of_center_position=44562861 | |||
|entrez_id=319594 | |entrez_id=319594 | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
|gene_alias=2310046M24Rik | |gene_alias=2310046M24Rik{{!}}A830014H24Rik{{!}}FIH{{!}}FIH1 | ||
|gene_description= | |gene_description=hypoxia-inducible factor 1, alpha subunit inhibitor | ||
|gene_id=319594 | |gene_id=319594 | ||
|gene_name= | |gene_name=hypoxia-inducible factor 1, alpha subunit inhibitor | ||
|gene_source=MGI:2442345 | |gene_source=MGI:2442345 | ||
|gene_symbol=Hif1an | |gene_symbol=Hif1an | ||
| Line 21: | Line 25: | ||
|nearest_refseq=NM_176958 | |nearest_refseq=NM_176958 | ||
|nearest_unigene=Mm.145278 | |nearest_unigene=Mm.145278 | ||
|num_trans= | |num_trans=319594 | ||
|species=mouse | |species=mouse | ||
|start=44562841 | |start=44562841 | ||
|start_of_center_position=44562860 | |||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box=-97(CTACTTAAAAGG,-,0.00) | ||
|transcript_name=ENSMUST00000131032.1 ENSMUST00000040455.4 | |transcript_name=ENSMUST00000131032.1 ENSMUST00000040455.4 BC130013 AK154774 AK084960 AK043636 AK141867 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_150825.1 | |tss_id=mm_150825.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q8BLR9 | |uniprot_id=Q8BLR9 | ||
}} | }} | ||
Latest revision as of 05:07, 27 July 2021
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 6 |
|---|---|
| Nearest PromoterID: | NM_176958 |
| Entrez ID: | 319594 |
| Nearest Unigene: | Mm.145278 |
| Nearest Refseq: | NM_176958 |
| Nearest Ensembl: | ENSMUSG00000036450 |
| Gene Name: | hypoxia-inducible factor 1, alpha subunit inhibitor |
| Gene Alias: | 2310046M24Rik|A830014H24Rik|FIH|FIH1 |
| Gene Description: | hypoxia-inducible factor 1, alpha subunit inhibitor |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -97(CTACTTAAAAGG,-,0.00) |
TSS expression
Expression data not found.