TSS: Rfmm 1989.1: Difference between revisions

Latest revision as of 13:18, 19 March 2025

Basic information about the TSS

TSS ID:	rfmm_1989.1
TSS ID(Version3):	mm_5921.1
Species:	mouse
Chr:	chr1

Start:	55170143
End:	55170288
Strand:	-

Source datasets

FANTOM5|DRA000914

Protocol

CAGE|CAGE_and_CAGEscan

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS,CTCF-bound (EM10D2272308,EM10E0935870)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-189
Nearest PromoterID:	NM_025283.3
Entrez ID:	Mob4
Nearest Unigene:	NM_001310585
Nearest Refseq:
Nearest Ensembl:
Gene Name:
Gene Alias:
Gene Type:
CpG%:	0.075862
GC%:	0.630137
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=promoter-TSS (NM_001310585.1)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=
 |gene_id=
-|gene_name=Mob4
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_025283.3
 |nearest_refseq=
+|nearest_transcripts=
 |nearest_unigene=NM_001310585
 |peak_score=1