TSS: Rfmm 23170.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=AK187561:0 AK213035:0 AK197493:0 AK199682:0 AK180745:-65 AK190120:-131 AK193906:339 AK177731:339 AK188596:-385 AK197639:-385 AK187458:-435 | |||
|annotation=TTS (XR_004941010.1) | |annotation=TTS (XR_004941010.1) | ||
|ccre_category=N | |ccre_category=N | ||
| Line 15: | Line 16: | ||
|gene_description= | |gene_description= | ||
|gene_id=407243 | |gene_id=407243 | ||
|gene_name= | |gene_name=plasmanylethanolamine desaturase 1 | ||
|gene_source=MGI:2142624 | |gene_source=MGI:2142624 | ||
|gene_symbol=Peds1 | |gene_symbol=Peds1 | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=XR_375265.5 | |nearest_promoter_id=XR_375265.5 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts=AK180745:-65 AK190120:-131 AK193906:339 AK177731:339 AK188596:-385 AK197639:-385 AK187458:-435 | |||
|nearest_unigene=XR_375265 | |nearest_unigene=XR_375265 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 14:13, 19 March 2025
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 11167 |
|---|---|
| Nearest PromoterID: | XR_375265.5 |
| Entrez ID: | Gm31852 |
| Nearest Unigene: | XR_375265 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | plasmanylethanolamine desaturase 1 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.041667 |
| GC%: | 0.680000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.