TSS: Rfmm 26102.1: Difference between revisions

Latest revision as of 15:00, 19 March 2025

Basic information about the TSS

TSS ID:	rfmm_26102.1
Species:	mouse
Chr:	chr3

Start:	54542048
End:	54542050
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AK139788:0
GeneID:	100503708
HGNC/MGI_ID:	MGI:3588285
UniProt_ID:
Nearer transcript ids and distances:	ENSMUST00000197444.2:59

Gene_name:	RIKEN cDNA B020017C02 gene
Gene_symbol:	B020017C02Rik
Gene_synonyms:	Gm19849
Gene_source:	MGI:3588285

TATA-Box annotation

Distance to TSS:	-665
Nearest PromoterID:	B020017C02Rik
Entrez ID:	B020017C02Rik
Nearest Unigene:	B020017C02Rik
Nearest Refseq:
Nearest Ensembl:
Gene Name:	RIKEN cDNA B020017C02 gene
Gene Alias:
Gene Type:	NA
CpG%:	0.000000
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=AK139788:0 ENSMUST00000197444.2:59
 |annotation=promoter-TSS (B020017C02Rik)
 |ccre_category=N
@@ Line 15: / Line 16: @@
 |gene_description=
 |gene_id=100503708
-|gene_name=B020017C02Rik
+|gene_name=RIKEN cDNA B020017C02 gene
 |gene_source=MGI:3588285
 |gene_symbol=B020017C02Rik
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=B020017C02Rik
 |nearest_refseq=
+|nearest_transcripts=ENSMUST00000197444.2:59
 |nearest_unigene=B020017C02Rik
 |peak_score=1