TSS: Rfmm 3647.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENSMUST00000027451.13:0 ENSMUST00000188952.7:0 ENSMUST00000188797.7:0 ENSMUST00000190149.7:0 ENSMUST00000189934.2:0 ENSMUST00000186930.2:0 NM_007936.3:0 LF192736:0 MA428313:0 AK147698:0 BC052164:0 AK028509:0 S57168:0 X65138:0 AK132203:0 AF357444:0 BC004782:46 LF202347:-485 MA437924:-485
|annotation=promoter-TSS (NM_007936.3)
|annotation=promoter-TSS (NM_007936.3)
|ccre_category=PLS
|ccre_category=PLS
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|gene_description=
|gene_description=
|gene_id=13838
|gene_id=13838
|gene_name=Epha4
|gene_name=Eph receptor A4
|gene_source=MGI:98277
|gene_source=MGI:98277
|gene_symbol=Epha4
|gene_symbol=Epha4
Line 25: Line 26:
|nearest_promoter_id=NM_007936.3
|nearest_promoter_id=NM_007936.3
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=BC004782:46 LF202347:-485 MA437924:-485
|nearest_unigene=NM_007936
|nearest_unigene=NM_007936
|peak_score=1
|peak_score=1

Latest revision as of 17:53, 19 March 2025

Basic information about the TSS

TSS ID:rfmm_3647.1
Species:mouse
Chr:chr1
Start:77491686
End:77491739
Strand:-
Source datasetsPRJDB10397|GSE117655|DRA000914
ProtocolC1CAGE|deepCAGE|CAGE_and_CAGEscan
TSS cluster detected*3

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:PLS (EM10D1069845,EM10E0442502)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENSMUST00000027451.13:0
ENSMUST00000188952.7:0
ENSMUST00000188797.7:0
ENSMUST00000190149.7:0
ENSMUST00000189934.2:0
ENSMUST00000186930.2:0
AK147698:0
BC052164:0
AK028509:0
S57168:0
X65138:0
AK132203:0
GeneID:13838
HGNC/MGI_ID:MGI:98277
UniProt_ID:A0A087WQW6 A0A087WQZ6 Q03137 Q3V1W9
Nearer transcript ids and distances:
  • BC004782:46
  • LF202347:-485
  • MA437924:-485
view more...
Gene_name:Eph receptor A4
Gene_symbol:Epha4
Gene_synonyms:2900005C20Rik Cek8 Hek8 Sek Sek1 Tyro1 rb
Gene_source:MGI:98277



TATA-Box annotation

Distance to TSS:13
Nearest PromoterID:NM_007936.3
Entrez ID:Epha4
Nearest Unigene:NM_007936
Nearest Refseq:
Nearest Ensembl:
Gene Name:Eph receptor A4
Gene Alias:
Gene Type:
CpG%:0.018868
GC%:0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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