TSS: Rfmm 42427.1: Difference between revisions

Latest revision as of 19:32, 19 March 2025

Basic information about the TSS

TSS ID:	rfmm_42427.1
Species:	mouse
Chr:	chr4

Start:	155859021
End:	155859031
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS,CTCF-bound (EM10D2765834,EM10E1140600)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_147776.4:3
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	AY030094:33 AK077240:35 BC036166:38 BC026919:44 AK030019:50 ENSMUST00000042196.4:-124 LF194816:-125 MA430393:-125 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-8
Nearest PromoterID:	NM_147776.4
Entrez ID:	Vwa1
Nearest Unigene:	XM_036164134
Nearest Refseq:
Nearest Ensembl:
Gene Name:
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.636364
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_147776.4:3 AY030094:33 AK077240:35 BC036166:38 BC026919:44 AK030019:50 ENSMUST00000042196.4:-124 LF194816:-125 MA430393:-125
 |annotation=promoter-TSS (NM_147776.4)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=
 |gene_id=
-|gene_name=Vwa1
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_147776.4
 |nearest_refseq=
+|nearest_transcripts=AY030094:33 AK077240:35 BC036166:38 BC026919:44 AK030019:50 ENSMUST00000042196.4:-124 LF194816:-125 MA430393:-125
 |nearest_unigene=XM_036164134
 |peak_score=1