TSS: Rfmm 51608.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENSMUST00000177466.8:0 ENSMUST00000166099.3:102 NM_001081962.2:138 AM275337:138 ENSMUST00000177354.2:160 AK164339:-450
|annotation=promoter-TSS (NM_001081962.2)
|annotation=promoter-TSS (NM_001081962.2)
|ccre_category=PLS
|ccre_category=PLS
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|gene_description=
|gene_description=
|gene_id=751865
|gene_id=751865
|gene_name=Sap25
|gene_name=sin3 associated polypeptide
|gene_source=MGI:3802945
|gene_source=MGI:3802945
|gene_symbol=Sap25
|gene_symbol=Sap25
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|nearest_promoter_id=NM_001081962.2
|nearest_promoter_id=NM_001081962.2
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=ENSMUST00000166099.3:102 NM_001081962.2:138 AM275337:138 ENSMUST00000177354.2:160 AK164339:-450
|nearest_unigene=NM_001081962
|nearest_unigene=NM_001081962
|peak_score=1
|peak_score=1

Latest revision as of 22:05, 19 March 2025

Basic information about the TSS

TSS ID:rfmm_51608.1
TSS ID(Version3):mm_43570.1
Species:mouse
Chr:chr5
Start:137639526
End:137639597
Strand:+
Source datasetsFANTOM5|DRA000914|PRJDB10397
ProtocolCAGE|CAGE_and_CAGEscan|C1CAGE
TSS cluster detected*3

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:PLS,CTCF-bound (EM10D2806419,EM10E1157428)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENSMUST00000177466.8:0
GeneID:751865
HGNC/MGI_ID:MGI:3802945
UniProt_ID:H3BLC5
Nearer transcript ids and distances:
  • ENSMUST00000166099.3:102
  • NM_001081962.2:138
  • AM275337:138
  • ENSMUST00000177354.2:160
  • AK164339:-450
view more...
Gene_name:sin3 associated polypeptide
Gene_symbol:Sap25
Gene_synonyms:25_kDa
Gene_source:MGI:3802945



TATA-Box annotation

Distance to TSS:-174
Nearest PromoterID:NM_001081962.2
Entrez ID:Sap25
Nearest Unigene:NM_001081962
Nearest Refseq:
Nearest Ensembl:
Gene Name:sin3 associated polypeptide
Gene Alias:
Gene Type:
CpG%:0.098592
GC%:0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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