TSS: Rfmm 53128.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=LF280531:4 MA516108:4 AB091827:8 ENSMUST00000176551.3:34 AJ006464:34 ENSMUST00000166678.2:-55 ENSMUST00000176204.8:-55 NM_130877.2:-55 NM_001040611.1:-55 LF204604:-56 MA440181:-56 LF280532:149 MA516109:149 LF195328:-166 MA430905:-166 LF203660:-258 MA439237:-258 LF280533:271 MA516110:271 | |||
|annotation=promoter-TSS (NM_001040611.1) | |annotation=promoter-TSS (NM_001040611.1) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description= | |gene_description= | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_130877.2 | |nearest_promoter_id=NM_130877.2 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts=AB091827:8 ENSMUST00000176551.3:34 AJ006464:34 ENSMUST00000166678.2:-55 ENSMUST00000176204.8:-55 NM_130877.2:-55 NM_001040611.1:-55 LF204604:-56 MA440181:-56 LF280532:149 MA516109:149 LF195328:-166 MA430905:-166 LF203660:-258 MA439237:-258 LF280533:271 MA516110:271 | |||
|nearest_unigene=NM_130877 | |nearest_unigene=NM_130877 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 22:30, 19 March 2025
Basic information about the TSS
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| Source datasets | DRA000914|PRJDB10397|GSE117655 | |||||||||||||
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| Protocol | CAGE_and_CAGEscan|C1CAGE|deepCAGE | |||||||||||||
| TSS cluster detected* | 3 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D2813585,EM10E1160800) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 60 |
|---|---|
| Nearest PromoterID: | NM_130877.2 |
| Entrez ID: | Peg10 |
| Nearest Unigene: | NM_130877 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.181818 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "AB091827:8 ENSMUST00000176551.3:34 AJ006464:34 ENSMUST00000166678.2:-55 ENSMUST00000176204.8:-55 NM_130877.2:-55 NM_001040611.1:-55 LF204604:-56 MA440181:-56 LF280532:149 MA516109:149 LF195328:-166 MA430905:-166 LF203660:-258 MA439237:-258 LF280533:271 MA516110:271" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.