TSS: Rfmm 55604.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENSMUST00000031815.12:0 ENSMUST00000204308.2:0 ENSMUST00000203371.3:0 AB041543:0 AK158136:0 AK128931:0 ENSMUST00000077093.7:12 AK173281:12 ENSMUST00000114571.8:-19 NM_001362145.1:-19 NM_001347152.1:-19 NM_001347153.1:-19 NM_133922.3:-19 NM_001362144.1:-19 AK040525:-19 BC066816:20 AK184881:36 ENSMUST00000127980.2:52 ENSMUST00000114572.9:220 AK162934:220 AK190223:226 | |||
|annotation=promoter-TSS (NM_001347152.1) | |annotation=promoter-TSS (NM_001347152.1) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description= | |gene_description= | ||
|gene_id=74869 77827 | |gene_id=74869 77827 | ||
|gene_name= | |gene_name=KRAB-A domain containing 1; RIKEN cDNA 4930447G04 gene | ||
|gene_source=MGI:1922119 MGI:1925077 | |gene_source=MGI:1922119 MGI:1925077 | ||
|gene_symbol=4930447G04Rik Krba1 | |gene_symbol=4930447G04Rik Krba1 | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=XM_036152396.1 | |nearest_promoter_id=XM_036152396.1 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts=ENSMUST00000077093.7:12 AK173281:12 ENSMUST00000114571.8:-19 NM_001362145.1:-19 NM_001347152.1:-19 NM_001347153.1:-19 NM_133922.3:-19 NM_001362144.1:-19 AK040525:-19 BC066816:20 AK184881:36 ENSMUST00000127980.2:52 ENSMUST00000114572.9:220 AK162934:220 AK190223:226 | |||
|nearest_unigene=XM_030255671 | |nearest_unigene=XM_030255671 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 23:10, 19 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|DRA000914 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|CAGE_and_CAGEscan | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D1991482,EM10E0819229) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 23 |
|---|---|
| Nearest PromoterID: | XM_036152396.1 |
| Entrez ID: | Krba1 |
| Nearest Unigene: | XM_030255671 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | KRAB-A domain containing 1; RIKEN cDNA 4930447G04 gene |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.097561 |
| GC%: | 0.595238 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Property "Nearest transcripts" (as page type) with input value "ENSMUST00000077093.7:12 AK173281:12 ENSMUST00000114571.8:-19 NM_001362145.1:-19 NM_001347152.1:-19 NM_001347153.1:-19 NM_133922.3:-19 NM_001362144.1:-19 AK040525:-19 BC066816:20 AK184881:36 ENSMUST00000127980.2:52 ENSMUST00000114572.9:220 AK162934:220 AK190223:226" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.