TSS: Rfmm 75761.1: Difference between revisions

Latest revision as of 04:46, 20 March 2025

Basic information about the TSS

TSS ID:	rfmm_75761.1
Species:	mouse
Chr:	chr8

Start:	3617959
End:	3618006
Strand:	+

Source datasets

PRJDB10397|DRA000914

Protocol

C1CAGE|CAGE_and_CAGEscan

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS (EM10D2106816,EM10E0870146)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000138454.2:0 ENSMUST00000153341.8:0 ENSMUST00000136592.2:0 AK168456:0 AK011562:0 AK049309:0
GeneID:	546049
HGNC/MGI_ID:	MGI:3612471
UniProt_ID:	Q8C7T0
Nearer transcript ids and distances:

Gene_name:	ribosomal protein S23, retrogene 1
Gene_symbol:	Rps23rg1
Gene_synonyms:	C330021F23Rik
Gene_source:	MGI:3612471

TATA-Box annotation

Distance to TSS:	-16
Nearest PromoterID:	NM_001024728.2
Entrez ID:	Rps23rg1
Nearest Unigene:	NM_001024728
Nearest Refseq:
Nearest Ensembl:
Gene Name:	ribosomal protein S23, retrogene 1
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.479167
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENSMUST00000138454.2:0 ENSMUST00000153341.8:0 ENSMUST00000136592.2:0 NM_001024728.2:0 AK168456:0 AK011562:0 AK049309:0
 |annotation=promoter-TSS (NM_001024728.2)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=
 |gene_id=546049
-|gene_name=Rps23rg1
+|gene_name=ribosomal protein S23, retrogene 1
 |gene_source=MGI:3612471
 |gene_symbol=Rps23rg1
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001024728.2
 |nearest_refseq=
+|nearest_transcripts=
 |nearest_unigene=NM_001024728
 |peak_score=1