TSS: Rfmm 80264.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENSMUST00000005601.9:0 ENSMUST00000210245.2:0 NM_016671.3:0 AK133753:0 BC032878:0 AF053005:0 AK040457:0 ENSMUST00000210790.2:1 AF265243:4 | |||
|annotation=promoter-TSS (NM_016671.3) | |annotation=promoter-TSS (NM_016671.3) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description= | |gene_description= | ||
|gene_id=50931 | |gene_id=50931 | ||
|gene_name= | |gene_name=interleukin 27 receptor, alpha | ||
|gene_source=MGI:1355318 | |gene_source=MGI:1355318 | ||
|gene_symbol=Il27ra | |gene_symbol=Il27ra | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_016671.3 | |nearest_promoter_id=NM_016671.3 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts=ENSMUST00000210790.2:1 AF265243:4 | |||
|nearest_unigene=XM_030243668 | |nearest_unigene=XM_030243668 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 06:01, 20 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|EPD|DRA000914 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database|CAGE_and_CAGEscan | |||||||||||||
| TSS cluster detected* | 3 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D2918107,EM10E1204421) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 5 |
|---|---|
| Nearest PromoterID: | NM_016671.3 |
| Entrez ID: | Il27ra |
| Nearest Unigene: | XM_030243668 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | interleukin 27 receptor, alpha |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.017241 |
| GC%: | 0.644068 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.