TSS: Rfmm 87256.1: Difference between revisions

Latest revision as of 07:56, 20 March 2025

Basic information about the TSS

TSS ID:	rfmm_87256.1
Species:	mouse
Chr:	chr9

Start:	53448058
End:	53448069
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS,CTCF-bound (EM10D2950844,EM10E1218764)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF197600:17 MA433177:17
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENSMUST00000232179.2:18 ENSMUST00000132403.2:85 AK139863:85 NM_007499.3:87 LF204935:87 MA440512:87 AK031702:90 LF307195:119 MA542772:119 ENSMUST00000150244.2:150 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	52
Nearest PromoterID:	XM_011242385.4
Entrez ID:	Atm
Nearest Unigene:	XR_870525
Nearest Refseq:
Nearest Ensembl:
Gene Name:
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.583333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF197600:17 MA433177:17 ENSMUST00000232179.2:18 ENSMUST00000132403.2:85 AK139863:85 NM_007499.3:87 LF204935:87 MA440512:87 AK031702:90 LF307195:119 MA542772:119 ENSMUST00000150244.2:150
 |annotation=promoter-TSS (NM_001081152.1)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=
 |gene_id=
-|gene_name=Atm
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=XM_011242385.4
 |nearest_refseq=
+|nearest_transcripts=ENSMUST00000232179.2:18 ENSMUST00000132403.2:85 AK139863:85 NM_007499.3:87 LF204935:87 MA440512:87 AK031702:90 LF307195:119 MA542772:119 ENSMUST00000150244.2:150
 |nearest_unigene=XR_870525
 |peak_score=1