TSS: Rfmm 92203.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=LF309827:174 MA545404:174 BC028875:-320 AK167271:-330 AK048460:-330 M57734:-359 AK042069:-369 ENSMUST00000217583.2:-370 AK076517:-370 AK171760:-370 AK034966:-370 ENSMUST00000111820.4:-373 AK046107:-373 AK034049:-379 NM_001200002.1:-383 AK153218:-383 AK166473:-386 NM_009752.2:-400 NR_108102.1:-400 NR_108101.1:-400 AK171593:-400 LF197847:-401 MA433424:-401 ENSMUST00000063042.11:-402 | |||
|annotation=intron (NR_108102.1, intron 1 of 14) | |annotation=intron (NR_108102.1, intron 1 of 14) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
| Line 15: | Line 16: | ||
|gene_description= | |gene_description= | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_001200002.1 | |nearest_promoter_id=NM_001200002.1 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts=BC028875:-320 AK167271:-330 AK048460:-330 M57734:-359 AK042069:-369 ENSMUST00000217583.2:-370 AK076517:-370 AK171760:-370 AK034966:-370 ENSMUST00000111820.4:-373 AK046107:-373 AK034049:-379 NM_001200002.1:-383 AK153218:-383 AK166473:-386 NM_009752.2:-400 NR_108102.1:-400 NR_108101.1:-400 AK171593:-400 LF197847:-401 MA433424:-401 ENSMUST00000063042.11:-402 | |||
|nearest_unigene=NM_001200002 | |nearest_unigene=NM_001200002 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 09:21, 20 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | pELS,CTCF-bound (EM10D2972460,EM10E1228074) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 391 |
|---|---|
| Nearest PromoterID: | NM_001200002.1 |
| Entrez ID: | Tmppe |
| Nearest Unigene: | NM_001200002 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.176471 |
| GC%: | 0.777778 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "BC028875:-320 AK167271:-330 AK048460:-330 M57734:-359 AK042069:-369 ENSMUST00000217583.2:-370 AK076517:-370 AK171760:-370 AK034966:-370 ENSMUST00000111820.4:-373 AK046107:-373 AK034049:-379 NM_001200002.1:-383 AK153218:-383 AK166473:-386 NM_009752.2:-400 NR_108102.1:-400 NR_108101.1:-400 AK171593:-400 LF197847:-401 MA433424:-401 ENSMUST00000063042.11:-402" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.